Gastroesophageal reflux (GER) may lead to apparent life threatening event (ALTE) during childhood. Two months old girl presented with cough and cyanosis. Previous history, physical examination and routine blood tests were normal. Echocardiography revealed secundum atrial septal defect. Laryngoscopy displayed posterior laryngeal granulation tissue. 24 hour pH monitoring failed to detect pathological GER. Prolonged GER scintigraphy revealed GER to the upper esophagus. Flexible fiberoptic bronchoscopy showed normal airway. Clinical findings disappeared with anti-GER treatment. Symptoms of GER may be complex and diagnosis may be difficult and it needs to be included in differential diagnosis of ALTE during early childhood.